Package: structSSI 1.2.0
structSSI: Multiple Testing for Hypotheses with Hierarchical or Group Structure
Performs multiple testing corrections that take specific structure of hypotheses into account, as described in Sankaran & Holmes (2014) <doi:10.18637/jss.v059.i13>.
Authors:
structSSI_1.2.0.tar.gz
structSSI_1.2.0.zip(r-4.7)structSSI_1.2.0.zip(r-4.6)structSSI_1.2.0.zip(r-4.5)
structSSI_1.2.0.tgz(r-4.6-any)structSSI_1.2.0.tgz(r-4.5-any)
structSSI_1.2.0.tar.gz(r-4.7-any)structSSI_1.2.0.tar.gz(r-4.6-any)
structSSI_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
structSSI/json (API)
| # Install 'structSSI' in R: |
| install.packages('structSSI', repos = c('https://krisrs1128.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/krisrs1128/structssi/issues
- chlamydiae - Chlamydiae Sub-Taxa of Global Patterns Data
- gtemp - Global mean land-ocean temperature deviations
Last updated from:294d228cd7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 225 | ||
| source / vignettes | OK | 181 | ||
| linux-release-x86_64 | OK | 227 | ||
| macos-release-arm64 | OK | 154 | ||
| macos-oldrel-arm64 | OK | 187 | ||
| windows-devel | OK | 221 | ||
| windows-release | OK | 165 | ||
| windows-oldrel | OK | 170 | ||
| wasm-release | OK | 121 |
Exports:Adaptive.GBHestimate.pi0EstimatedHFDRControlhFDR.adjustinitializeOracle.GBHplotPlotHypTreeshowsummarytreePValues
Dependencies:ade4apeBiobaseBiocGenericsbiomformatBiostringscliclustercodetoolscpp11crayondata.tabledigestfarverforeachgenericsggplot2gluegtableigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmulttestnlmepermutephyloseqpixmappkgconfigplyrR6RColorBrewerRcppRcppArmadilloreshape2rlangS4VectorsS7scalesSeqinfospstringistringrsurvivalvctrsveganviridisLitewithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Structured Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data | structSSI-package structSSI |
| Adaptive Group Benjamini-Hochberg Procedure | Adaptive.GBH |
| Chlamydiae Sub-Taxa of Global Patterns Data | chlamydiae |
| Estimation of Proportion of Null Hypotheses among p-values | estimate.pi0 |
| Estimate FDR control variations for HFDR procedure | EstimatedHFDRControl |
| Manage Group Benjamini-Hochberg Outputs | GBH GBH,ANY GBH-class initialize,GBH-method plot,GBH,ANY-method show,GBH-method summary,GBH-method |
| Global mean land-ocean temperature deviations | gtemp |
| FDR Controlling Procedure for Hierarchically Structured Hypotheses | hFDR.adjust |
| Manage Hierarchical Test Results | hypothesesTree-class initialize,hypothesesTree-method plot,hypothesesTree,ANY-method show,hypothesesTree-method summary,hypothesesTree-method |
| Oracle Group Benjamini-Hochberg Correction | Oracle.GBH |
| Interactively VIsualize a HypothesisTree | PlotHypTree |
| Create tree of p-values for phyloseq data | treePValues |
